GNPS2 Tool Index¶
This is a global tool index for GNPS2. Throughout this documentation we have very detailed information for how to use way more tools than we though we'd have, but its a good problem to have!
However, we recognize it might be difficult for people to simply see what all is availble in GNPS as tool and web services. This table is always evolving and hope to make it easier for people to navigate.
Please help us fill in more completely!
GNPS2 Web Tools¶
These are web tools that is run by the GNPS2 team and provides complementary funcationality to GNPS2.
| Tool | Documentation | Source Code | Citation |
|---|---|---|---|
| Pubmed Co-Authors List | --- | --- | |
| Nature Journals Author Quick Entry | --- | --- | |
| GNPS2 Spectral Similarity Hub | --- | --- | |
| GNPS2 Structure Server | --- | --- | |
| GNPS2 Cytoscape | --- | --- | |
| Metabolomics Spectrum Resolver | Documentation | GitHub | Citation |
| GNPS2 Networking URL Formatter | --- | --- | |
| GNPS2 Classical Networking Upset Plot Dashboard | --- | GitHub | --- |
| GNPS2 FBMN Upset Plot Dashboard | --- | --- | |
| NP Classifier | --- | GitHub | --- |
| GNPS2 Dashboard | --- | --- | |
| GNPS2 Plotter Dashboard (Beta) | --- | --- | |
| GNPS2 Dataset File Explorer (Beta) | --- | --- | |
| GNPS2 Public Libraries Download List | --- | --- | |
| GNPS2 Spectral Similarity Hub | --- | --- | |
| GNPS2 Tiny Mass Sharer | --- | --- |
GNPS2 Jupyter Notebooks¶
These notebooks are for postprocessing of results from GNPS/GNPS2 and other computational processing that have not be integrated yet. If they are super useful, we can integrate into high throughput workflows. For now, give them a try!
| Tool | Documentation | Source Code | Binder Launch |
|---|---|---|---|
| GNPS2 MASST Post Processing | --- | GitHub |  |
| GNPS2 MassQL and Networking Integration | --- | GitHub | |
| GNPS2 Networking Family Consistent Fragmentation | --- | GitHub | |
| GNPS2 MassQL Post Processing | --- | GitHub | |
| CMMC Integration | --- | GitHub | |
Community Tools GNPS2 Interfaces with¶
| Tool | Publication |
|---|---|
| MS2LDA.org | Citation |
| NPAtlas | Citation |
| MIBiG | Citation |
| ClassyFire | Citation |
| SMART NMR | Citation |
| MassBank | Citation |
| Cytoscape | Citation |
| ProteoWizard | Citation |
| SNAP-MS | Citation and Documentation |