Network module
GNPS Utils - Network Module
This module provides functionality to connect to GNPS and retrieve data.
Author: Shahneh
- modifinder.utilities.network.accession_to_usi(accession: str) str[source]
Get the USI from an accession id param accession: str return: str
- modifinder.utilities.network.get_data(identifier: str) dict[source]
- Get data from GNPS, either from USI or Accession. if the identifier points to a known item in gnps,
it will return the full data, otherwise it will return partial data (ms2 data)
param identifier: str - USI or Accession return: dict - dictionary of data
- modifinder.utilities.network.get_matched_peaks(identifier1: str, identifier2: str) dict[source]
runs the gnps modified cosine matching algorithm and returns the matched peaks param identifier1: str - USI or Accession param identifier2: str - USI or Accession return: dict - dictionary of matched peaks