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Analyze your data

🚧 Work In Progress¶

This page is under construction, thanks for your patience!

Analyze your data¶

This flow chart is a guide on how to submit an analysis workflow.

Click on the flow chart boxes for links to the required tools/pages*
Protein data analysis can be conducted without a metadata sheet.
Small molecule data analysis requires a metadata sheet.

Metadata template

flowchart TD A[Submit your data for analysis] --> B[Download and fill out an analysis metadata sheet] B --> C[Upload your metadata and mzML files to the GNPS2 File Browser] C --> D[Open the idbac_analysis_workflow] D --> E[Select appropriate data for each file selection section] E --> F[Select preferred distance metric] F --> G[Select preferred database distance threshold] G --> H[Submit workflow] H --> I[Choose a data analysis option] I --> J[Web IDBac Analysis Platform] I --> K[Database Search Summary- see tab below] click B href "https://docs.google.com/spreadsheets/d/1Y7WHrFQR_SYpR_p5u_xL4BQimYorQ3-1PfAfVil3nL0/edit?gid=678327011#gid=678327011" click D href "https://gnps2.org/workflowinput?workflowname=idbac_analysis_workflow" click J href "https://wang-bioinformatics-lab.github.io/GNPS2_Documentation/idbacanalysisplatform/" %% Styling style A fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:24px style B fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style C fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style D fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style E fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style F fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style G fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style H fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style I fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style J fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px style K fill:#FFFFFF,stroke:#000000,stroke-width:2px,font-size:18px %% Link Styling linkStyle 0 stroke:#ffcc33,stroke-width:3px linkStyle 1 stroke:#ffcc33,stroke-width:3px linkStyle 2 stroke:#ffcc33,stroke-width:3px linkStyle 3 stroke:#ffcc33,stroke-width:3px linkStyle 4 stroke:#ffcc33,stroke-width:3px linkStyle 5 stroke:#ffcc33,stroke-width:3px linkStyle 6 stroke:#ffcc33,stroke-width:3px linkStyle 7 stroke:#ffcc33,stroke-width:3px linkStyle 8 stroke:#ffcc33,stroke-width:3px

More Resources¶

QC your Data

Use the following images to convert raw Bruker data to mzML:

Metadata Instructions

This page can also be found in the Metadata Excel doc.

    DepositionMetadataInstructions
Navigating the idbac_analysis_workflow page

Use the following images to convert raw Bruker data to mzML: